When I assemble an engine I like to use grease to lube up all the bits. The piston, wrist pin, little end bearing, gaskets, o-rings. Pretty much everything get a bit of grease. Shops sell engine building grease for this purpose. It helps with the sealing, and protects the parts during assembly, and first startup.
Prepping for assembly. Polished up exhaust port.
Trimming the base gasket.
Bridge cooling holes in the piston (the drill slipped on the middle whole opps!).
Okay time to put on the top. This is a method I learned from the Moped cats. First you put the clip into one side of the piston (the side you wont be sliding the wrist pin into initially. Then slip the piston into the cylinder.
Then partially slide in the wrist pin to the edge of the first side of the piston leaving room for the crank, and little end bearing (you can do this step pin in before putting the piston into the cylinder).
Next rotate the crank to TDC, and carefully slid the cylinder onto the studs to the point where the wrist pin lines up with the little end of the crank with the wrist pin bearing already in it.
This next step is crucial! Once the cylinder is sitting there with the pin through the bearing waiting for the other clip to be inserted take a clean rag, and cover up the area below the piston. If you drop a clip into the crank case you might have to split the cases to get it out. It's much easier to cover it up with a rag.
Then insert the second clip.
After that the cylinder can be lowered down to the base gasket. I then like to check to make sure the piston isn't above the bottom of the ports when at BDC (bottom dead center).
Then place in the o-rings.
Then place on the head (it has it's own o-ring that you need to put on first--here the grease helps keep it in place when you flip the head into position).
Add the washers and nuts, and tighten to around 10-12 Nm using a cross pattern slowly from one stud to the next. Do this repeatedly until all the nuts are at the proper torque. It's important to not tighten one down all the way, and then go to the next. You could damage something that way, and you probably wont get a good seal.
